Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs67889271 chr6:163045753 T/G 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs67891751 chr11:16507622 C/T 8.69E-9 119 40.67 52.22 7.15 KM Plot
THYM rs6790231 chr3:9855904 C/T 1.31E-6 118 36.4 52.58 25.83 KM Plot
THYM rs679087 chr12:29917265 C/A 7.02E-6 118 38.48 49.73 25.82 KM Plot
THYM rs67970052 chr7:29655038 C/T 5.39E-13 118 38.33 46.07 6 KM Plot
THYM rs6799850 chr3:26050460 A/T 3.53E-5 116 27.2 50.47 38.58 KM Plot
THYM rs6799851 chr3:26050463 A/T 3.53E-5 116 27.2 50.47 38.58 KM Plot
THYM rs6805930 chr3:118955611 A/G 6.75E-13 118 3.83 31.28 46.07 KM Plot
THYM rs68072609 chr7:29682467 C/T 4.66E-13 119 38.33 45.87 6 KM Plot
THYM rs6808406 chr3:142813036 G/A 6.18E-5 119 49.6 36.03 42.25 KM Plot
THYM rs6812634 chr4:9639831 G/T 9.25E-9 117 40.67 42.9 12.63 KM Plot
THYM rs6815313 chr4:126141087 A/G 0.000123 114 42.73 36.03 38.33 KM Plot
THYM rs68158127 chr7:29684698 A/G 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs68169519 chr7:29685158 A/G 5.34E-13 118 38.58 45.87 6 KM Plot
THYM rs6818137 chr4:70062598 A/G 5.73E-13 118 39.75 49.6 6 KM Plot